說明
The datasets presented here aim to summarize over 150 years of myxomycetes research in Ukraine. The majority of the data has been extracted from published literature sources spanning the years 1842 to 2023, with a minor supplement from unpublished herbarium specimens. The datasets include 5036 georeferenced occurrences, 339 taxa and 91 literature sources. Seventy one of used literature sources are published in open access.
資料紀錄
此資源名錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 338 筆紀錄。
亦存在 2 筆延伸集的資料表。延伸集中的紀錄補充核心集中紀錄的額外資訊。 每個延伸集資料表中資料筆數顯示如下。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Yatsiuk I, Leontyev D, Leshchenko Y, Viunnyk V (2024). The comprehensive checklist and extended occurrence and reference datasets of myxomycetes of Ukraine. Version 1.10. V. N. Karazin Kharkiv National University. Checklist dataset. https://ukraine.ipt.gbif.no/resource?r=myxomycetesukraine&v=1.10
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 V. N. Karazin Kharkiv National University。 This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: 7f90f977-1004-40f8-a471-7bbf517a006d。 V. N. Karazin Kharkiv National University 發佈此資源，並經由Participant Node Managers Committee同意向GBIF註冊成為資料發佈者。
關鍵字
Checklist; Inventorythematic derivedFromOccurrence taxonomicAuthority nomenclatorAuthority
聯絡資訊
- 元數據提供者 ●
- 典藏經理 ●
- 出處 ●
- 連絡人
https://orcid.org/0000-0003-1610-3533
- 出處
- 出處
- 出處
地理涵蓋範圍
The entire territory of Ukraine in 1991 borders
| 界定座標範圍 | 緯度南界 經度西界 [44.465, 21.973], 緯度北界 經度東界 [52.696, 40.43] |
|---|
分類群涵蓋範圍
The checklist includes 339 taxa of slime moulds, among them 331 are species, and the rest are identified to the genus level. Nearly all records represent the class Myxomycetes (Eumycotozoa, Amoebozoa). One species belongs to the class Ceratiomyxomycetes (Eumycetozoa, Amoebozoa), and one represents the family Acrasidae (Heterolobosea, Excavata).
| Phylum | Myxomycetes (slime moulds), Ceratiomyxomycetes (slime moulds) |
|---|---|
| Family | Acrasidae (slime moulds) |
時間涵蓋範圍
| 起始日期 / 結束日期 | 1830-01-01 / 2021-09-22 |
|---|
計畫資料
BioDATA grant for data mobilization including digitization, data quality assurance, data preparation, and publication of collection specimen and other species data from Ukraine to GBIF. Dataset preparation was supported within the project "Deciphering Cyrillic: the checklist from invisible sources". More details on the grant program here (https://www.nhm.uio.no/english/research/projects/biodata/activities/data-mobilization-call-ukraine.html).
| 計畫名稱 | Deciphering Cyrillic: the checklist from invisible sources |
|---|---|
| 辨識碼 | Cepa-LT-2017/10049 |
| 經費來源 | BioDATA partners, NLBIF, GBIF Norway, and the UiO Natural History Museum |
參與計畫的人員:
- 研究主持人
- 託管人
取樣方法
The literature sources selected for this dataset included only scientific literature, comprising monographs, peer-reviewed journal articles, conference abstracts, annual reports of protected areas, PhD and Master’s thesis. Herbarium specimens incorporated here have either been identified or verified by academic myxomycetes researchers. Information from the literature was extracted manually into comma-separated spreadsheets containing columns named according to the Darwin Core standard. To avoid duplication, sources, supported by datasets already published in GBIF, were not entered into the occurrence dataset, but added later on the stage of data analysis and checklist generation. The checklist dataset was created automatically by extracting unique values from the scientificName column within the occurrence dataset, following the completion of the taxonomic assessment. The References dataset was generated through manual extraction of information from literature sources, with the data organized into a comma-separated spreadsheet. The columns in this dataset adhere to the Darwin Core standard. The literature sources originally lacking a DOI, were published on Zenodo repository (zenodo.org) and assigned one. In total 71 sources were published.
| 研究範圍 | 1830-2021, Ukraine |
|---|---|
| 品質控管 | Spreadsheets were checked and cleaned with Openrefine v. 3.2 (https://openrefine.org/). Taxa names were checked for misspelling by matching against the GBIF Species Matching tool. Results of georeferencing were checked visually by plotting occurrences with QGIS software (QGIS Development Team, 2020). Taxonomic assessment was based upon “An on line nomenclatural information system of Eumycetozoa” (Lado, 2005), except in cases where subspecies or forms were reported. In instances involving subspecies/forms, as these are not recognized as valid taxa in the aforementioned nomenclature database, taxonomic treatments were based on several monographs (Martin and Alexopoulos, 1969; Nannenga-Bremekamp, 1991; Poulain et al., 2011), as well as expert taxonomic opinions. |
方法步驟描述:
- The occurrence dataset was produced with the following steps: 1. Survey and digitization of professional literature resources on myxomycetes occurrences in the territory of Ukraine in its borders as of 1991 (total 91 sources); 2. Preparation of Darwin Core-formatted template; 3. Data extraction from the literature sources into corresponding columns (in total 5036 occurrences); 4. Data extraction from the herbarium labels into corresponding columns; 5. Taxonomic assessment of names; 6. When necessary, automatic georeferencing of occurrences. If the coordinates of the occurrence were missing in the literature or on herbarium labels, the occurrence was georeferenced based on the text description of the occurrence location. Georeferencing was done automatically using the Geocode by Awesome Table extension for Google Sheets (https://workspace.google.com/marketplace/app/geocode_by_awesome_table/904124517349). Precision was determined according to the accuracy of the distance to the occurrence from the authors' description in the text. The accuracy of the given coordinates is determined as follows: one number in decimal place corresponds to the precision of 11.1 km, two numbers = 1.11 km, with each subsequent digit, the distance is reduced by a factor of 10. In the case of localities indicated by names that have been renamed or no longer exist, georeferencing was carried out by the method of digitizing available maps using QGIS 3.16.3 (https://qgis.org/en/site/), followed by the extraction of coordinates. WGS84 was used as a spatial reference system. 7. Data cleaning using OpenRefine; 8. Matching species names; 9. Plotting of occurrences on the map and visual checkup of coordinates. The Reference dataset was derived from the occurrence dataset with the following steps: 1. Preparation of Darwin Core-formatted template; 2. Data extraction from the literature sources into corresponding columns; 3. Data cleaning using OpenRefine. The checklist dataset was derived from the occurrence dataset with the following steps: 1. Preparation of Darwin Core-formatted template; 2. Extraction of unique values from a scientificName column of the occurrence dataset to a scientificName of the checklist dataset. 3. Adding species from recent scientific publications for which datasets have already been published in GBIF
額外的詮釋資料
| 目的 | The purpose of this publication is to serve as a foundational resource for conducting country-wise ecological studies, particularly vital for evaluating the potential impact of the ongoing war on biodiversity in the future. |
|---|---|
| 替代的識別碼 | 7f90f977-1004-40f8-a471-7bbf517a006d |
| https://ukraine.ipt.gbif.no/resource?r=myxomycetesukraine |