説明
Agaricales is the largest order within the class Agaricomycetes (Basidiomycota, Fungi). Most of the genera have a gilled (lamellate) basidiomata, though gasteroids, secotioids, and cyphelloids types of fruit bodies also occur in several families and genera. Whereas gilled Agaricales (usually called "agarics") are the most investigated part of the Fungi, the last summary of their diversity in Ukraine was published back in 1996 (Minter and Dudka 1996). Only several families have undergone a deep review over the last 30 years, and most of the data on species occurrences distributed throughout only partially digitized, underrepresented on the Web, and published primarily in Ukrainian sources.
Here we provide the list of the 1201 scientific names of gilled Agaricales (species and infraspecific taxon ranks) ever reported from the territory of Ukraine, based on the more than 300 sources published from 1900 to 2021 yr., as well as digitized collection specimens from three mycological collections. For each taxon mentioned in the checklist, we provide references to either known collection specimens or published sources, where researchers can find more information about the records – 8797 records in total.
データ レコード
この チェックリスト リソース内のデータは、1 つまたは複数のデータ テーブルとして生物多様性データを共有するための標準化された形式であるダーウィン コア アーカイブ (DwC-A) として公開されています。 コア データ テーブルには、1,201 レコードが含まれています。
拡張データ テーブルは1 件存在しています。拡張レコードは、コアのレコードについての追加情報を提供するものです。 各拡張データ テーブル内のレコード数を以下に示します。
この IPT はデータをアーカイブし、データ リポジトリとして機能します。データとリソースのメタデータは、 ダウンロード セクションからダウンロードできます。 バージョン テーブルから公開可能な他のバージョンを閲覧でき、リソースに加えられた変更を知ることができます。
バージョン
次の表は、公にアクセス可能な公開バージョンのリソースのみ表示しています。
引用方法
研究者はこの研究内容を以下のように引用する必要があります。:
Prylutskyi O, Prydiuk M, Malanyuk V, Yakunina V (2022): Reference-based checklist of gilled Agaricales (Basidiomycota, Fungi) from Ukraine. v1.8. V. N. Karazin Kharkiv National University. Dataset/Checklist. https://ukraine.ipt.gbif.no/resource?r=test&v=1.8
権利
研究者は権利に関する下記ステートメントを尊重する必要があります。:
パブリッシャーとライセンス保持者権利者は V. N. Karazin Kharkiv National University。 To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF登録
このリソースをはGBIF と登録されており GBIF UUID: f994f6e8-4d7d-45bd-ab10-d59ecdfdbe80が割り当てられています。 Participant Node Managers Committee によって承認されたデータ パブリッシャーとして GBIF に登録されているV. N. Karazin Kharkiv National University が、このリソースをパブリッシュしました。
キーワード
Checklist; Inventoryregional
連絡先
- メタデータ提供者 ●
- Custodiansteward(保管者） ●
- 最初のデータ採集者 ●
- 連絡先
https://orcid.org/0000-0001-5730-517X
- 最初のデータ採集者
- 最初のデータ採集者
- 最初のデータ採集者
地理的範囲
Data cover all the territory of Ukraine. It was possible to georeference 5904 records (67 per cent of the records).
| 座標（緯度経度） | 南 西 [43.835, 21.445], 北 東 [53.015, 41.309] |
|---|
生物分類学的範囲
Order Agaricales (Basidiomycota, Agaricomycetes, Fungi), excluding families Clavariaceae, Cyphellaceae, Fistulinaceae, Niaceae, Phelloriniaceae, Pterulaceae, Schizophyllaceae, Stephanosporaceae, Typhulaceae, as well as genera Lycoperdon, Calvatia, Disciseda, and other genera comprising taxa with gasteroids, secotioids, and cyphelloids types of fruit bodies.
| Kingdom | Fungi |
|---|---|
| Phylum | Basidiomycota |
| Class | Agaricomycetes |
| Family | Agaricales |
時間的範囲
| 生成(収集）期間 | 1900-2022 |
|---|
プロジェクトデータ
In collaboration with the Finnish Biodiversity Information Facility (FinBIF) and Pensoft Publishers, GBIF has announced a new call for authors to submit and publish data papers on Northern Eurasia in a special collection of Biodiversity Data Journal (BDJ).
| タイトル | Northern Eurasia 2022 |
|---|---|
| 識別子 | N-Eurasia-2022 |
プロジェクトに携わる要員:
収集方法
The largest source of the data was the specimens and literature references available through the online database “Fungi of Ukraine” (Andrianova et al., 2006). The whole database comprises data on more than 52,400 records of fungi and fungus-like protists, covering the vast majority of specimens for KW collection, as well as the records from the sources published by 2000 y. Since data are unable to download and no longer accessible in a raw format, they were mined semi-automatically, using a custom Python parser written by Valeria Yakunina, for occurrences and literature references separately. 5078 occurrences of gilled Agaricales were then filtered based on family and genus names (see Taxonomic coverage for the full list of taxa). Literature sources published after 2000 y., as well as the sources not covered by “Fungi of Ukraine”, such as “Identification key for Ukrainian fungi” (Zerova et al., 1979), were digitized manually by the authors of the dataset. Newer collection specimens from the CWU and VM collections were digitized manually. Specimens from CWU collections have been also uploaded into the PlutoF biodiversity data management system (Abarenkov et al., 2010), where they are alongside extended information. If the specimen has been mentioned in one of the digitized literature sources, we treated such cases as a single record, to avoid duplications. For georeferenced records from the “Fungi of Ukraine” database, we converted geographic coordinates provided by the source into a decimal format using the formula “degree + minutes/60 + seconds/3600”. Since we have no information about georeferencing protocol which has been used during the data preparation, we left terms describing georeference and coordinate uncertainty empty. Records derived from the recent sources were georeferenced by the authors of the dataset either manually from maps or obtained from GPS coordinates when available. Coordinate uncertainty values were calculated following DarwinCore recommendations (https://dwc.tdwg.org/terms/#dwc:coordinateUncertaintyInMeters ), as well as Georeference best practices (Chapman and Wieczorek, 2020). For the records for which the source provides location information at a level coarser than a particular protected area (e.g. administrative or natural region of Ukraine, or accompanied with the remark “Throughout the territory of Ukraine”), we left all georeferencing terms empty. To make a list of taxa we harmonized scientific names, provided by the authors of corresponding publications and/or specimens. In the first step, we match our list of names with the GBIF Backbone Taxonomy (GBIF Secretariat, 2022) using GBIF species matching tool (https://www.gbif.org/tools/species-lookup), then manually check mismatching records against Index Fungorum nomenclatural database (Kirk and Cooper, 2022). For the names treated as accepted by both sources, we used the name provided by GBIF Backbone Taxonomy. For the mismatched names, we followed the Index Fungorum view. We also kept all the names for infraspecific taxa, represented non-type varietas/forma, and followed Index Fungorum in nomenclature for such cases. For some taxa which both GBIF Backbone taxonomy and Index Fungorum treat as synonyms, we kept names provided by the authors of records, for example, Agaricus tabularis Peck. For each name in the resulted list of scientific names (species, varietas, and formas) we then assigned a unique identifier (taxonID), through which taxa linked to the records in the occurrence part of the data. Full scientific names as they were written by the authors were kept in “verbatimIdentification” column of “occurrence” data sheet.
| Study Extent | Data for this checklist comprise references from 345 published sources, dating from 1900 to 2021 y. We also incorporated information on digitized collection specimens from three mycological collections – The mycological part of the Herbarium of M.G. Kholodny Institute of Botany of National Academy of Sciences of Ukraine, Kyiv (KW-M), and the mycological part of the Herbarium of V.N. Karazin Kharkiv National University, Kharkiv (CWU(MYC)), and mycological collection of Halych National Nature Park, Halych (VM) – totally 5371 specimens. Specimens and references were included based on the following criteria: 1. Taxon belongs to the Order Agaricales (excluding families Clavariaceae, Cyphellaceae, Fistulinaceae, Niaceae, Phelloriniaceae, Pterulaceae, Schizophyllaceae, Stephanosporaceae, Typhulaceae, as well as genera Lycoperdon, Calvatia, Disciseda, and other genera comprising taxa with gasteroids, secotioids, and cyphelloids types of fruit bodies), and identified to either species or infraspecific level. 2. Occurrences lie within the official state boundary of Ukraine. 3. Literature source is credible, i.e. authored by recognized mycologists, and published in the peer-review scientific literature (journal articles, monographs, conference proceedings). |
|---|---|
| Quality Control | Since the main purpose of this checklist is to provide researchers with the most comprehensive list of the scientific names of gilled Agaricales reported from the territory of Ukraine, we did not make a deep taxonomical revision of the data. That is why synonyms or even ambiguous scientific names might be present. For each taxon mentioned in the checklist, we provide references to either known collection specimens or published sources, where researchers can find more information about the records. We used GBIF species matching tool (https://www.gbif.org/tools/species-lookup) to find possible typos in scientific names. We also used Index Fungorum nomenclatural database (Kirk and Cooper, 2022) to check the current status of names. For data cleaning and final adjustment, we used OpenRefine (https://openrefine.org/) and R (R Core Team, 2020). |
Method step description:
- Parsing the “Fungi of Ukraine” database, coordinate conversion into decimal degrees when available.
- Manual digitization of the sources either published after 2000 y. or not covered by the “Fungi of Ukraine” database.
- Extraction of available collection data from CWU, VM, and KW custom collection management systems.
- Georeferencing of the records accompanied with annotations described location at the level of the particular protected areas or finer.
- Adaptation of the data to the DarwinCore standard.
- Nomenclatural revision, preparing the list of scientific names.
コレクションデータ
| コレクション名 | M.G. Kholodny Institute of Botany, National Academy of Sciences of Ukraine herbarium (KW) |
|---|---|
| コレクション識別子 | https://sweetgum.nybg.org/science/ih/herbarium-details/?irn=125430 |
| コレクション名 | V. N. Karazin National University herbarium (CWU) |
|---|---|
| コレクション識別子 | https://sweetgum.nybg.org/science/ih/herbarium-details/?irn=126957 |
| コレクション名 | Mycological collection of the Halych National Nature Park, Halych (VM) |
|---|
| 標本保存方法 | Dried |
|---|
書誌情報の引用
- Abarenkov, K., Tedersoo, L., Nilsson, R.H., Vellak, K., Saar, I., Veldre, V., Parmasto, E., Prous, M., Aan, A., Ots, M., Kurina, O., Ostonen, I., Jõgeva, J., Halapuu, S., Põldmaa, K., Toots, M., Truu, J., Larsson, K.-H., Kõljalg, U., 2010. PlutoF – a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences. Evol Bioinform Online 6, EBO.S6271. https://doi.org/10.4137/EBO.S6271
- Andrianova, T.V., Dudka, I.O., Hayova, V.P., Heluta, V.P., Isikov, V.P., Kondratiuk, S.Ya., Krivomaz, T.I., Kuzub, V.V., Minter, D.W., Minter, T.J., Prydiuk, M.P., Tykhonenko, Yu.Ya., 2006. Fungi of Ukraine. http://www.cybertruffle.org.uk/ukrafung/eng/index.htm
- Chapman, A., Wieczorek, J., 2020. Georeferencing Best Practices. https://doi.org/10.15468/DOC-GG7H-S853
- GBIF Secretariat, 2022. GBIF Backbone Taxonomy. https://doi.org/10.15468/39omei
- Kirk, P.M., Cooper, J., 2022. Index Fungorum. http://www.indexfungorum.org/Index.htm
- R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/
- Zerova, M.Ya., Sosin, P.Ye., Rozhenko, H.L., 1979. Handbook of Fungi of Ukraine, vol. 5. Basidiomycetes, book 2. Boletales, Strobilomycetales, Tricholomatales, Entolomatales, Russulales, Agaricales, Gasteromycetes. [in Ukrainian]. Naukova dumka, Kyiv.
- Minter, D.W. & Dudka, I.O. 1996. Fungi of Ukraine. A preliminary checklist. International Mycological Institute & M.G. Kholodny Institute of Botany; Egham & Kiev.
追加のメタデータ
| 代替識別子 | f994f6e8-4d7d-45bd-ab10-d59ecdfdbe80 |
|---|---|
| https://ukraine.ipt.gbif.no/resource?r=test |