Barcoded Reticulariaceae of the World

Enregistrements de données

Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 476 enregistrements.

Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.

Versions

Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.

Comment citer

Les chercheurs doivent citer cette ressource comme suit:

Leontyev D, Yatsiuk I (2023). Barcoded Reticulariaceae of the World. Version 1.10. V. N. Karazin Kharkiv National University. Occurrence dataset. https://ukraine.ipt.gbif.no/resource?r=reticulariaceae&v=1.10

Droits

Les chercheurs doivent respecter la déclaration de droits suivante:

L’éditeur et détenteur des droits de cette ressource est V. N. Karazin Kharkiv National University. Ce travail est sous licence Creative Commons Attribution (CC-BY) 4.0.

Enregistrement GBIF

Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 2b767e54-7921-4908-af93-84a9c35264c1.  V. N. Karazin Kharkiv National University publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du Participant Node Managers Committee.

Mots-clé

Occurrence; Specimen taxonomicAuthority

Contacts

Couverture géographique

Europe, Asia, Northern America, Southern America, Australia

Couverture taxonomique

Family Reticulariaceae and allies, Class Myxomycetes

Méthodes d'échantillonnage

The data for this dataset were collected and processed during the previous taxonomic studies. Nearly all of the research material, with the exception of several old collections, underwent molecular barcoding, primarily involving the 18S rDNA gene, but also the elongation factor 1a gene (EF1a) and mitochondrial cytochrome oxidase subunit I gene (COI). For those sequences that are stored in the NCBI GenBank, accession numbers are provided in the dataset. It should be noted that identical sequences obtained from different accessions were not published in GenBank as separate records in the 2014–2019 publications. Therefore, for most of the Alwisia, Siphoptychium and Tubifera accessions included in the dataset, the numbers with which they share an identical barcode are given, rather than their own GenBank numbers. In such cases, the table contains the indicator "ident." (the barcode is identical to the following accession number).

Description des étapes de la méthode:

1. Method steps 1. Specimens acquisition. Specimens were either collected in the field by authors of publications referenced herein or loaned from herbaria collections. 2. Morphological examination and DNA barcoding. For these data refer to the publications cited herein. 3. Taxonomic assessment. The data presented here served as a basis for original taxonomic studies including the description of new taxa. 4. Digitization of herbaria labels. 5. Georeferencing of occurrences. 6. Preparation of the dataset in DwC terms. 7. Data cleaning using OpenRefine (2022) and QGIS (QGIS Development Team, 2020)

Citations bibliographiques

1. Leontyev D.V., Buttgereit M., Kochergina A., Shchepin O., Schnittler M. 2023a. Two independent genetic markers support separation of the myxomycete Lycogala epidendrum into numerous biological species. Mycologia. 114 (6). P.1–12. https://doi.org/10.1080/00275514.2022.2133526
2. Leontyev D.V., Ishchenko Y., Schnittler M. 2023b. Fifteen new species from the genus Lycogala (Myxomycetes). Mycologia. 115 (4): 524–560. https://doi.org/10.1080/00275514.2023.2199109
3. Leontyev D., Schnittler M., Moreno Horcajada G., Stephenson S., Mitchell D.W., Rojas C. 2014a. The genus Alwisia (Myxomycetes) revalidated, with two species new to science. Mycologia 106(5): 936–948. https://doi.org/10.3852/13-314
4. Leontyev D., Schnittler M., Stephenson S. 2015. A critical revision of the Tubifera ferruginosa complex. Mycologia 107 (5): 959–985. https://doi.org/10.3852/14-271
5. Leontyev D.V., Schnittler M. 2023. What are Lycogala confusum and L. exiguum? Revising authentic collections of myxomycetes in the light of a molecular-aided species concept. Nova Hedwigia 116 (3−4): 403–416 https://doi.org/10.1127/nova_hedwigia/2023/0820
6. Leontyev D.V., Schnittler M., Stephenson S.L. 2014b. A new species of Alwisia (Myxomycetes) from new South Wales and Tasmania. Mycologia 106(6): 1212–1219. https://doi.org/10.3852/14-075
7. Leontyev D.V., Schnittler M., Stephenson S.L., Novozhilov Y.K. Systematic revision of the Tubifera casparyi T. dictyoderma complex: Resurrection of the genus Siphoptychium and introduction of the new genus Thecotubifera. Mycologia. 2019. 111(6). P. 981–997. https://doi.org/10.1080/00275514.2019.1660842
8. Lloyd S.J., Leontyev D.V., Dagamac N.H. Three new species of Tubifera from Tasmania and New South Wales. Phytotaxa. 2019. N 414 (5). P. 240–252. https://doi.org/10.11646/phytotaxa.414.5.2
9. OpenRefine (2022) OpenRefine: A free, open source, powerful tool for working with messy data. 3.5.2. Release date: 2022-1-26.URL: https://openrefine.org/
10. QGIS Development Team, 2020. QGIS Geographic Information System. Open Source Geospatial Foundation Project. http://qgis.osgeo.org.

Métadonnées additionnelles