Description
The dataset "Barcoded Reticulariaceae of the World" serves as a repository of primary data regarding specimens that were used for a comprehensive review of the family Reticulariaceae, Myxomycetes. It encompasses a total of 523 occurrences, including 36 type specimens, from collections gathered from four continents across 24 countries. This dataset includes 43 distinct species and two subspecies of Myxomycetes, among them rare, endemic, and recently described species. These collections were used as research materials in a series of published studies that focused on critical revisions of various genera, namely Alwisia (Leontyev et al. 2014a, 2014b), Lycogala (Leontyev 2023a, 2023b, Leontyev & Schnittler 2023), Tubifera (Leontyev et al. 2015, Lloyd et al. 2019), Siphoptychium, and Thecotubifera (Leontyev et al. 2019). In addition to the mentioned genera, the dataset also contains data pertaining to the genus Reticularia and members of the Cribrariaceae family that share morphological similarities with Reticulariaceae, specifically Lindbladia and Licaethalium. Nearly all of the specimens, with the exception of several old collections, have been barcoded, primarily involving the 18S rDNA gene, but also the elongation factor 1a gene and mitochondrial cytochrome oxidase subunit I gene. For those sequences that are stored in the NCBI GenBank, accession numbers are provided in the dataset.
Enregistrements de données
Les données de cette ressource occurrence ont été publiées sous forme d'une Archive Darwin Core (Darwin Core Archive ou DwC-A), le format standard pour partager des données de biodiversité en tant qu'ensemble d'un ou plusieurs tableurs de données. Le tableur de données du cœur de standard (core) contient 476 enregistrements.
Cet IPT archive les données et sert donc de dépôt de données. Les données et métadonnées de la ressource sont disponibles pour téléchargement dans la section téléchargements. Le tableau des versions liste les autres versions de chaque ressource rendues disponibles de façon publique et permet de tracer les modifications apportées à la ressource au fil du temps.
Versions
Le tableau ci-dessous n'affiche que les versions publiées de la ressource accessibles publiquement.
Comment citer
Les chercheurs doivent citer cette ressource comme suit:
Leontyev D, Yatsiuk I (2023). Barcoded Reticulariaceae of the World. Version 1.10. V. N. Karazin Kharkiv National University. Occurrence dataset. https://ukraine.ipt.gbif.no/resource?r=reticulariaceae&v=1.10
Droits
Les chercheurs doivent respecter la déclaration de droits suivante:
L’éditeur et détenteur des droits de cette ressource est V. N. Karazin Kharkiv National University. Ce travail est sous licence Creative Commons Attribution (CC-BY) 4.0.
Enregistrement GBIF
Cette ressource a été enregistrée sur le portail GBIF, et possède l'UUID GBIF suivante : 2b767e54-7921-4908-af93-84a9c35264c1. V. N. Karazin Kharkiv National University publie cette ressource, et est enregistré dans le GBIF comme éditeur de données avec l'approbation du Participant Node Managers Committee.
Mots-clé
Occurrence; Specimen taxonomicAuthority
Contacts
- Fournisseur Des Métadonnées ●
- Créateur ●
- Personne De Contact ●
- Chercheur Principal
https://orcid.org/https://orcid.org/0000-0002-4122-1091
- Conservateur ●
- Créateur
Couverture géographique
Europe, Asia, Northern America, Southern America, Australia
| Enveloppe géographique | Sud Ouest [-54,83, -149,064], Nord Est [66,283, 159,803] |
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Couverture taxonomique
Family Reticulariaceae and allies, Class Myxomycetes
| Class | Myxomycetes |
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Méthodes d'échantillonnage
The data for this dataset were collected and processed during the previous taxonomic studies. Nearly all of the research material, with the exception of several old collections, underwent molecular barcoding, primarily involving the 18S rDNA gene, but also the elongation factor 1a gene (EF1a) and mitochondrial cytochrome oxidase subunit I gene (COI). For those sequences that are stored in the NCBI GenBank, accession numbers are provided in the dataset. It should be noted that identical sequences obtained from different accessions were not published in GenBank as separate records in the 2014–2019 publications. Therefore, for most of the Alwisia, Siphoptychium and Tubifera accessions included in the dataset, the numbers with which they share an identical barcode are given, rather than their own GenBank numbers. In such cases, the table contains the indicator "ident." (the barcode is identical to the following accession number).
| Etendue de l'étude | The dataset encompasses a total of 523 specimen-based occurrences, including 36 type specimens from collections gathered from four continents across 24 countries. |
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Description des étapes de la méthode:
- Method steps 1. Specimens acquisition. Specimens were either collected in the field by authors of publications referenced herein or loaned from herbaria collections. 2. Morphological examination and DNA barcoding. For these data refer to the publications cited herein. 3. Taxonomic assessment. The data presented here served as a basis for original taxonomic studies including the description of new taxa. 4. Digitization of herbaria labels. 5. Georeferencing of occurrences. 6. Preparation of the dataset in DwC terms. 7. Data cleaning using OpenRefine (2022) and QGIS (QGIS Development Team, 2020)
Citations bibliographiques
- Leontyev D.V., Buttgereit M., Kochergina A., Shchepin O., Schnittler M. 2023a. Two independent genetic markers support separation of the myxomycete Lycogala epidendrum into numerous biological species. Mycologia. 114 (6). P.1–12. https://doi.org/10.1080/00275514.2022.2133526
- Leontyev D.V., Ishchenko Y., Schnittler M. 2023b. Fifteen new species from the genus Lycogala (Myxomycetes). Mycologia. 115 (4): 524–560. https://doi.org/10.1080/00275514.2023.2199109
- Leontyev D., Schnittler M., Moreno Horcajada G., Stephenson S., Mitchell D.W., Rojas C. 2014a. The genus Alwisia (Myxomycetes) revalidated, with two species new to science. Mycologia 106(5): 936–948. https://doi.org/10.3852/13-314
- Leontyev D., Schnittler M., Stephenson S. 2015. A critical revision of the Tubifera ferruginosa complex. Mycologia 107 (5): 959–985. https://doi.org/10.3852/14-271
- Leontyev D.V., Schnittler M. 2023. What are Lycogala confusum and L. exiguum? Revising authentic collections of myxomycetes in the light of a molecular-aided species concept. Nova Hedwigia 116 (3−4): 403–416 https://doi.org/10.1127/nova_hedwigia/2023/0820
- Leontyev D.V., Schnittler M., Stephenson S.L. 2014b. A new species of Alwisia (Myxomycetes) from new South Wales and Tasmania. Mycologia 106(6): 1212–1219. https://doi.org/10.3852/14-075
- Leontyev D.V., Schnittler M., Stephenson S.L., Novozhilov Y.K. Systematic revision of the Tubifera casparyi T. dictyoderma complex: Resurrection of the genus Siphoptychium and introduction of the new genus Thecotubifera. Mycologia. 2019. 111(6). P. 981–997. https://doi.org/10.1080/00275514.2019.1660842
- Lloyd S.J., Leontyev D.V., Dagamac N.H. Three new species of Tubifera from Tasmania and New South Wales. Phytotaxa. 2019. N 414 (5). P. 240–252. https://doi.org/10.11646/phytotaxa.414.5.2
- OpenRefine (2022) OpenRefine: A free, open source, powerful tool for working with messy data. 3.5.2. Release date: 2022-1-26.URL: https://openrefine.org/
- QGIS Development Team, 2020. QGIS Geographic Information System. Open Source Geospatial Foundation Project. http://qgis.osgeo.org.
Métadonnées additionnelles
| Objet | The primary goal of this publication is to make data on the global distribution of species in the Reticulariaceae family available. Over the past decade, significant changes in the taxonomy of this family have occurred, but these changes have not yet been incorporated into identification literature. Many traditional species such as Tubifera ferruginosa, T. casparyi, T. microsperma, Lycogala epidendrum, and L. exiguum have been redefined more narrowly based on molecular data. Consequently, their geographical distribution appeared to be more limited than previously believed. Previously published data on the distribution of these taxa should therefore be used with caution. Our dataset offers reliable information about the distribution of such revised species, as well as recently described taxa, whose identification has been confirmed with molecular barcoding and meticulous morphological studies. |
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| Identifiants alternatifs | 2b767e54-7921-4908-af93-84a9c35264c1 |
| https://ukraine.ipt.gbif.no/resource?r=reticulariaceae |