說明
The dataset "Barcoded Reticulariaceae of the World" serves as a repository of primary data regarding specimens that were used for a comprehensive review of the family Reticulariaceae, Myxomycetes. It encompasses a total of 523 occurrences, including 36 type specimens, from collections gathered from four continents across 24 countries. This dataset includes 43 distinct species and two subspecies of Myxomycetes, among them rare, endemic, and recently described species. These collections were used as research materials in a series of published studies that focused on critical revisions of various genera, namely Alwisia (Leontyev et al. 2014a, 2014b), Lycogala (Leontyev 2023a, 2023b, Leontyev & Schnittler 2023), Tubifera (Leontyev et al. 2015, Lloyd et al. 2019), Siphoptychium, and Thecotubifera (Leontyev et al. 2019). In addition to the mentioned genera, the dataset also contains data pertaining to the genus Reticularia and members of the Cribrariaceae family that share morphological similarities with Reticulariaceae, specifically Lindbladia and Licaethalium. Nearly all of the specimens, with the exception of several old collections, have been barcoded, primarily involving the 18S rDNA gene, but also the elongation factor 1a gene and mitochondrial cytochrome oxidase subunit I gene. For those sequences that are stored in the NCBI GenBank, accession numbers are provided in the dataset.
資料紀錄
此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 476 筆紀錄。
此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。
版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Leontyev D, Yatsiuk I (2023). Barcoded Reticulariaceae of the World. Version 1.10. V. N. Karazin Kharkiv National University. Occurrence dataset. https://ukraine.ipt.gbif.no/resource?r=reticulariaceae&v=1.10
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 V. N. Karazin Kharkiv National University。 This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: 2b767e54-7921-4908-af93-84a9c35264c1。 V. N. Karazin Kharkiv National University 發佈此資源，並經由Participant Node Managers Committee同意向GBIF註冊成為資料發佈者。
關鍵字
Occurrence; Specimen taxonomicAuthority
聯絡資訊
- 元數據提供者 ●
- 出處 ●
- 連絡人 ●
- 研究主持人
https://orcid.org/https://orcid.org/0000-0002-4122-1091
- 典藏經理 ●
- 出處
地理涵蓋範圍
Europe, Asia, Northern America, Southern America, Australia
| 界定座標範圍 | 緯度南界 經度西界 [-54.83, -149.064], 緯度北界 經度東界 [66.283, 159.803] |
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分類群涵蓋範圍
Family Reticulariaceae and allies, Class Myxomycetes
| Class | Myxomycetes |
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取樣方法
The data for this dataset were collected and processed during the previous taxonomic studies. Nearly all of the research material, with the exception of several old collections, underwent molecular barcoding, primarily involving the 18S rDNA gene, but also the elongation factor 1a gene (EF1a) and mitochondrial cytochrome oxidase subunit I gene (COI). For those sequences that are stored in the NCBI GenBank, accession numbers are provided in the dataset. It should be noted that identical sequences obtained from different accessions were not published in GenBank as separate records in the 2014–2019 publications. Therefore, for most of the Alwisia, Siphoptychium and Tubifera accessions included in the dataset, the numbers with which they share an identical barcode are given, rather than their own GenBank numbers. In such cases, the table contains the indicator "ident." (the barcode is identical to the following accession number).
| 研究範圍 | The dataset encompasses a total of 523 specimen-based occurrences, including 36 type specimens from collections gathered from four continents across 24 countries. |
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方法步驟描述:
- Method steps 1. Specimens acquisition. Specimens were either collected in the field by authors of publications referenced herein or loaned from herbaria collections. 2. Morphological examination and DNA barcoding. For these data refer to the publications cited herein. 3. Taxonomic assessment. The data presented here served as a basis for original taxonomic studies including the description of new taxa. 4. Digitization of herbaria labels. 5. Georeferencing of occurrences. 6. Preparation of the dataset in DwC terms. 7. Data cleaning using OpenRefine (2022) and QGIS (QGIS Development Team, 2020)
引用文獻
- Leontyev D.V., Buttgereit M., Kochergina A., Shchepin O., Schnittler M. 2023a. Two independent genetic markers support separation of the myxomycete Lycogala epidendrum into numerous biological species. Mycologia. 114 (6). P.1–12. https://doi.org/10.1080/00275514.2022.2133526
- Leontyev D.V., Ishchenko Y., Schnittler M. 2023b. Fifteen new species from the genus Lycogala (Myxomycetes). Mycologia. 115 (4): 524–560. https://doi.org/10.1080/00275514.2023.2199109
- Leontyev D., Schnittler M., Moreno Horcajada G., Stephenson S., Mitchell D.W., Rojas C. 2014a. The genus Alwisia (Myxomycetes) revalidated, with two species new to science. Mycologia 106(5): 936–948. https://doi.org/10.3852/13-314
- Leontyev D., Schnittler M., Stephenson S. 2015. A critical revision of the Tubifera ferruginosa complex. Mycologia 107 (5): 959–985. https://doi.org/10.3852/14-271
- Leontyev D.V., Schnittler M. 2023. What are Lycogala confusum and L. exiguum? Revising authentic collections of myxomycetes in the light of a molecular-aided species concept. Nova Hedwigia 116 (3−4): 403–416 https://doi.org/10.1127/nova_hedwigia/2023/0820
- Leontyev D.V., Schnittler M., Stephenson S.L. 2014b. A new species of Alwisia (Myxomycetes) from new South Wales and Tasmania. Mycologia 106(6): 1212–1219. https://doi.org/10.3852/14-075
- Leontyev D.V., Schnittler M., Stephenson S.L., Novozhilov Y.K. Systematic revision of the Tubifera casparyi T. dictyoderma complex: Resurrection of the genus Siphoptychium and introduction of the new genus Thecotubifera. Mycologia. 2019. 111(6). P. 981–997. https://doi.org/10.1080/00275514.2019.1660842
- Lloyd S.J., Leontyev D.V., Dagamac N.H. Three new species of Tubifera from Tasmania and New South Wales. Phytotaxa. 2019. N 414 (5). P. 240–252. https://doi.org/10.11646/phytotaxa.414.5.2
- OpenRefine (2022) OpenRefine: A free, open source, powerful tool for working with messy data. 3.5.2. Release date: 2022-1-26.URL: https://openrefine.org/
- QGIS Development Team, 2020. QGIS Geographic Information System. Open Source Geospatial Foundation Project. http://qgis.osgeo.org.
額外的詮釋資料
| 目的 | The primary goal of this publication is to make data on the global distribution of species in the Reticulariaceae family available. Over the past decade, significant changes in the taxonomy of this family have occurred, but these changes have not yet been incorporated into identification literature. Many traditional species such as Tubifera ferruginosa, T. casparyi, T. microsperma, Lycogala epidendrum, and L. exiguum have been redefined more narrowly based on molecular data. Consequently, their geographical distribution appeared to be more limited than previously believed. Previously published data on the distribution of these taxa should therefore be used with caution. Our dataset offers reliable information about the distribution of such revised species, as well as recently described taxa, whose identification has been confirmed with molecular barcoding and meticulous morphological studies. |
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| 替代的識別碼 | 2b767e54-7921-4908-af93-84a9c35264c1 |
| https://ukraine.ipt.gbif.no/resource?r=reticulariaceae |