說明
Agaricales is the largest order within the class Agaricomycetes (Basidiomycota, Fungi). Most of the genera have a gilled (lamellate) basidiomata, though gasteroids, secotioids, and cyphelloids types of fruit bodies also occur in several families and genera. Whereas gilled Agaricales (usually called "agarics") are the most investigated part of the Fungi, the last summary of their diversity in Ukraine was published back in 1996 (Minter and Dudka 1996). Only several families have undergone a deep review over the last 30 years, and most of the data on species occurrences distributed throughout only partially digitized, underrepresented on the Web, and published primarily in Ukrainian sources.
Here we provide the list of the 1201 scientific names of gilled Agaricales (species and infraspecific taxon ranks) ever reported from the territory of Ukraine, based on the more than 300 sources published from 1900 to 2021 yr., as well as digitized collection specimens from three mycological collections. For each taxon mentioned in the checklist, we provide references to either known collection specimens or published sources, where researchers can find more information about the records – 8797 records in total.
資料紀錄
此資源名錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 1,201 筆紀錄。
亦存在 1 筆延伸集的資料表。延伸集中的紀錄補充核心集中紀錄的額外資訊。 每個延伸集資料表中資料筆數顯示如下。
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版本
以下的表格只顯示可公開存取資源的已發布版本。
如何引用
研究者應依照以下指示引用此資源。:
Prylutskyi O, Prydiuk M, Malanyuk V, Yakunina V (2022): Reference-based checklist of gilled Agaricales (Basidiomycota, Fungi) from Ukraine. v1.8. V. N. Karazin Kharkiv National University. Dataset/Checklist. https://ukraine.ipt.gbif.no/resource?r=test&v=1.8
權利
研究者應尊重以下權利聲明。:
此資料的發布者及權利單位為 V. N. Karazin Kharkiv National University。 To the extent possible under law, the publisher has waived all rights to these data and has dedicated them to the Public Domain (CC0 1.0). Users may copy, modify, distribute and use the work, including for commercial purposes, without restriction.
GBIF 註冊
此資源已向GBIF註冊，並指定以下之GBIF UUID: f994f6e8-4d7d-45bd-ab10-d59ecdfdbe80。 V. N. Karazin Kharkiv National University 發佈此資源，並經由Participant Node Managers Committee同意向GBIF註冊成為資料發佈者。
關鍵字
Checklist; Inventoryregional
聯絡資訊
- 元數據提供者 ●
- 託管人 ●
- 出處 ●
- 連絡人
https://orcid.org/0000-0001-5730-517X
- 出處
地理涵蓋範圍
Data cover all the territory of Ukraine. It was possible to georeference 5904 records (67 per cent of the records).
| 界定座標範圍 | 緯度南界 經度西界 [43.835, 21.445], 緯度北界 經度東界 [53.015, 41.309] |
|---|
分類群涵蓋範圍
Order Agaricales (Basidiomycota, Agaricomycetes, Fungi), excluding families Clavariaceae, Cyphellaceae, Fistulinaceae, Niaceae, Phelloriniaceae, Pterulaceae, Schizophyllaceae, Stephanosporaceae, Typhulaceae, as well as genera Lycoperdon, Calvatia, Disciseda, and other genera comprising taxa with gasteroids, secotioids, and cyphelloids types of fruit bodies.
| Kingdom | Fungi |
|---|---|
| Phylum | Basidiomycota |
| Class | Agaricomycetes |
| Family | Agaricales |
時間涵蓋範圍
| 彙整期間 | 1900-2022 |
|---|
計畫資料
In collaboration with the Finnish Biodiversity Information Facility (FinBIF) and Pensoft Publishers, GBIF has announced a new call for authors to submit and publish data papers on Northern Eurasia in a special collection of Biodiversity Data Journal (BDJ).
| 計畫名稱 | Northern Eurasia 2022 |
|---|---|
| 辨識碼 | N-Eurasia-2022 |
參與計畫的人員:
取樣方法
The largest source of the data was the specimens and literature references available through the online database “Fungi of Ukraine” (Andrianova et al., 2006). The whole database comprises data on more than 52,400 records of fungi and fungus-like protists, covering the vast majority of specimens for KW collection, as well as the records from the sources published by 2000 y. Since data are unable to download and no longer accessible in a raw format, they were mined semi-automatically, using a custom Python parser written by Valeria Yakunina, for occurrences and literature references separately. 5078 occurrences of gilled Agaricales were then filtered based on family and genus names (see Taxonomic coverage for the full list of taxa). Literature sources published after 2000 y., as well as the sources not covered by “Fungi of Ukraine”, such as “Identification key for Ukrainian fungi” (Zerova et al., 1979), were digitized manually by the authors of the dataset. Newer collection specimens from the CWU and VM collections were digitized manually. Specimens from CWU collections have been also uploaded into the PlutoF biodiversity data management system (Abarenkov et al., 2010), where they are alongside extended information. If the specimen has been mentioned in one of the digitized literature sources, we treated such cases as a single record, to avoid duplications. For georeferenced records from the “Fungi of Ukraine” database, we converted geographic coordinates provided by the source into a decimal format using the formula “degree + minutes/60 + seconds/3600”. Since we have no information about georeferencing protocol which has been used during the data preparation, we left terms describing georeference and coordinate uncertainty empty. Records derived from the recent sources were georeferenced by the authors of the dataset either manually from maps or obtained from GPS coordinates when available. Coordinate uncertainty values were calculated following DarwinCore recommendations (https://dwc.tdwg.org/terms/#dwc:coordinateUncertaintyInMeters ), as well as Georeference best practices (Chapman and Wieczorek, 2020). For the records for which the source provides location information at a level coarser than a particular protected area (e.g. administrative or natural region of Ukraine, or accompanied with the remark “Throughout the territory of Ukraine”), we left all georeferencing terms empty. To make a list of taxa we harmonized scientific names, provided by the authors of corresponding publications and/or specimens. In the first step, we match our list of names with the GBIF Backbone Taxonomy (GBIF Secretariat, 2022) using GBIF species matching tool (https://www.gbif.org/tools/species-lookup), then manually check mismatching records against Index Fungorum nomenclatural database (Kirk and Cooper, 2022). For the names treated as accepted by both sources, we used the name provided by GBIF Backbone Taxonomy. For the mismatched names, we followed the Index Fungorum view. We also kept all the names for infraspecific taxa, represented non-type varietas/forma, and followed Index Fungorum in nomenclature for such cases. For some taxa which both GBIF Backbone taxonomy and Index Fungorum treat as synonyms, we kept names provided by the authors of records, for example, Agaricus tabularis Peck. For each name in the resulted list of scientific names (species, varietas, and formas) we then assigned a unique identifier (taxonID), through which taxa linked to the records in the occurrence part of the data. Full scientific names as they were written by the authors were kept in “verbatimIdentification” column of “occurrence” data sheet.
| 研究範圍 | Data for this checklist comprise references from 345 published sources, dating from 1900 to 2021 y. We also incorporated information on digitized collection specimens from three mycological collections – The mycological part of the Herbarium of M.G. Kholodny Institute of Botany of National Academy of Sciences of Ukraine, Kyiv (KW-M), and the mycological part of the Herbarium of V.N. Karazin Kharkiv National University, Kharkiv (CWU(MYC)), and mycological collection of Halych National Nature Park, Halych (VM) – totally 5371 specimens. Specimens and references were included based on the following criteria: 1. Taxon belongs to the Order Agaricales (excluding families Clavariaceae, Cyphellaceae, Fistulinaceae, Niaceae, Phelloriniaceae, Pterulaceae, Schizophyllaceae, Stephanosporaceae, Typhulaceae, as well as genera Lycoperdon, Calvatia, Disciseda, and other genera comprising taxa with gasteroids, secotioids, and cyphelloids types of fruit bodies), and identified to either species or infraspecific level. 2. Occurrences lie within the official state boundary of Ukraine. 3. Literature source is credible, i.e. authored by recognized mycologists, and published in the peer-review scientific literature (journal articles, monographs, conference proceedings). |
|---|---|
| 品質控管 | Since the main purpose of this checklist is to provide researchers with the most comprehensive list of the scientific names of gilled Agaricales reported from the territory of Ukraine, we did not make a deep taxonomical revision of the data. That is why synonyms or even ambiguous scientific names might be present. For each taxon mentioned in the checklist, we provide references to either known collection specimens or published sources, where researchers can find more information about the records. We used GBIF species matching tool (https://www.gbif.org/tools/species-lookup) to find possible typos in scientific names. We also used Index Fungorum nomenclatural database (Kirk and Cooper, 2022) to check the current status of names. For data cleaning and final adjustment, we used OpenRefine (https://openrefine.org/) and R (R Core Team, 2020). |
方法步驟描述:
- Parsing the “Fungi of Ukraine” database, coordinate conversion into decimal degrees when available.
- Manual digitization of the sources either published after 2000 y. or not covered by the “Fungi of Ukraine” database.
- Extraction of available collection data from CWU, VM, and KW custom collection management systems.
- Georeferencing of the records accompanied with annotations described location at the level of the particular protected areas or finer.
- Adaptation of the data to the DarwinCore standard.
- Nomenclatural revision, preparing the list of scientific names.
收藏資料
| 蒐藏名稱 | M.G. Kholodny Institute of Botany, National Academy of Sciences of Ukraine herbarium (KW) |
|---|---|
| 蒐藏編號 | https://sweetgum.nybg.org/science/ih/herbarium-details/?irn=125430 |
| 蒐藏名稱 | V. N. Karazin National University herbarium (CWU) |
|---|---|
| 蒐藏編號 | https://sweetgum.nybg.org/science/ih/herbarium-details/?irn=126957 |
| 蒐藏名稱 | Mycological collection of the Halych National Nature Park, Halych (VM) |
|---|
| 標本保存方法 | Dried |
|---|
引用文獻
- Abarenkov, K., Tedersoo, L., Nilsson, R.H., Vellak, K., Saar, I., Veldre, V., Parmasto, E., Prous, M., Aan, A., Ots, M., Kurina, O., Ostonen, I., Jõgeva, J., Halapuu, S., Põldmaa, K., Toots, M., Truu, J., Larsson, K.-H., Kõljalg, U., 2010. PlutoF – a Web Based Workbench for Ecological and Taxonomic Research, with an Online Implementation for Fungal ITS Sequences. Evol Bioinform Online 6, EBO.S6271. https://doi.org/10.4137/EBO.S6271
- Andrianova, T.V., Dudka, I.O., Hayova, V.P., Heluta, V.P., Isikov, V.P., Kondratiuk, S.Ya., Krivomaz, T.I., Kuzub, V.V., Minter, D.W., Minter, T.J., Prydiuk, M.P., Tykhonenko, Yu.Ya., 2006. Fungi of Ukraine. http://www.cybertruffle.org.uk/ukrafung/eng/index.htm
- Chapman, A., Wieczorek, J., 2020. Georeferencing Best Practices. https://doi.org/10.15468/DOC-GG7H-S853
- GBIF Secretariat, 2022. GBIF Backbone Taxonomy. https://doi.org/10.15468/39omei
- Kirk, P.M., Cooper, J., 2022. Index Fungorum. http://www.indexfungorum.org/Index.htm
- R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/
- Zerova, M.Ya., Sosin, P.Ye., Rozhenko, H.L., 1979. Handbook of Fungi of Ukraine, vol. 5. Basidiomycetes, book 2. Boletales, Strobilomycetales, Tricholomatales, Entolomatales, Russulales, Agaricales, Gasteromycetes. [in Ukrainian]. Naukova dumka, Kyiv.
- Minter, D.W. & Dudka, I.O. 1996. Fungi of Ukraine. A preliminary checklist. International Mycological Institute & M.G. Kholodny Institute of Botany; Egham & Kiev.
額外的詮釋資料
| 替代的識別碼 | f994f6e8-4d7d-45bd-ab10-d59ecdfdbe80 |
|---|---|
| https://ukraine.ipt.gbif.no/resource?r=test |