Descrição
The dataset contains detailed sampling data on the mole rats (genus Spalax and Nannospalax) used for phylogenetic analyses.
Registros de Dados
Os dados deste recurso de ocorrência foram publicados como um Darwin Core Archive (DwC-A), que é o formato padronizado para compartilhamento de dados de biodiversidade como um conjunto de uma ou mais tabelas de dados. A tabela de dados do núcleo contém 64 registros.
This IPT archives the data and thus serves as the data repository. The data and resource metadata are available for download in the downloads section. The versions table lists other versions of the resource that have been made publicly available and allows tracking changes made to the resource over time.
Versões
A tabela abaixo mostra apenas versões de recursos que são publicamente acessíveis.
Como citar
Pesquisadores deveriam citar esta obra da seguinte maneira:
Rusin M (2024). Blind mole rat (Spalacidae) sampling, used for phylogenetic analyses. Version 1.2. Ukrainian Nature Conservation Group (NGO). Occurrence dataset. https://ukraine.ipt.gbif.no/resource?r=spalaxoccurrenceeateu1&v=1.2
Direitos
Pesquisadores devem respeitar a seguinte declaração de direitos:
O editor e o detentor dos direitos deste trabalho é Ukrainian Nature Conservation Group (NGO). This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.
GBIF Registration
Este recurso foi registrado no GBIF e atribuído ao seguinte GBIF UUID: 368d59c2-8b6e-45a5-9209-ead5a8461614. Ukrainian Nature Conservation Group (NGO) publica este recurso, e está registrado no GBIF como um publicador de dados aprovado por Participant Node Managers Committee.
Palavras-chave
Occurrence; Spalax; mole rat; rodents; biodiversity; Eastern Europe; Nannospalax; mammals; Observation
Contatos
- Provedor Dos Metadados ●
- Originador ●
- Ponto De Contato
https://orcid.org/0000-0003-4349-4795
- Custódio De Dados
Cobertura Geográfica
The dataset consists of records from Romania, Ukraine and Russia.
| Coordenadas delimitadoras | Sul Oeste [43,24, 23,72], Norte Leste [48,657, 47,49] |
|---|
Cobertura Taxonômica
The dataset consists of rodents from genera Spalax and Nannospalax.
| Reino | Animalia |
|---|---|
| Filo | Chordata |
| Class | Mammalia |
| Ordem | Rodentia |
| Família | Spalacidae |
| Gênero | Spalax, Nannospalax |
Cobertura Temporal
| Data Inicial / Data final | 2009-05-15 / 2019-04-09 |
|---|
Métodos de Amostragem
41 new original samples of seven Spalacidae were collected in Ukraine, Romania and Russia during 2016-2019 years. Additional samples denote material accessible via GenBank (19 samples). Mole rats were collected in the field using hoe technic, gophinator traps or hand-picked (live captured during dispersal above ground or road mortality). Tissue samples were collected in 96% ethanol. DNA isolation and amplification has been performed in the Zonguldak Bülent Ecevit University (Türkiye) and sequencing outsourced in Macrogen (the Netherlands). One mitochondrial gene (full cytochrome b) and one nuclear gene (first exon of IRBP) were obtained for most of the samples. All original nucleotide data uploaded to NCBI GenBank.
| Área de Estudo | The dataset consists of records of small rodents from Spalacidae family made on the territory of Romania, Ukraine and Russia in the period from 2009 to 2019 by author with the help of additional resources. |
|---|---|
| Controle de Qualidade | All species identified in the field, and with genetic markers. |
Descrição dos passos do método:
- Surveys for mole rats: detailed results of surveys available at https://www.gbif.org/dataset/5c216d11-fe9a-4953-b9e4-1feb0b8bf788; https://www.gbif.org/dataset/3cc90eba-6de4-4d39-8f9a-8e1770120f10; https://www.gbif.org/dataset/599f4843-f07a-4369-8c53-ae4fb561f5e1.
- Animal trapping.
- Sample storage in ethanol.
- DNA isolation.
- DNA amplification.
- DNA sequencing.
- Uploading original nucleotide sequences to NCBI GenBank.
- Preparing a dataset of samples according to Darwin Core standards.
Citações bibliográficas
- Rusin, M., Çetintaş, O., Ghazali, M., Sándor, A. D., & Yanchukov, A. (2023). Underworld: Evolution of blind mole rats in Eastern Europe. Preprint.
- Németh A, Homonnay ZG, Krízsik V, et al (2013) Old views and new insights: taxonomic revision of the Bukovina blind mole rat, Spalax graecus (Rodentia: Spalacinae). Zoological Journal of the Linnean Society 169:903–914.
- Chişamera G, Bužan EV, Sahlean T, et al (2014) Bukovina blind mole rat Spalax graecus revisited: phylogenetics, morphology, taxonomy, habitat associations and conservation. Mammal Review 44:19–29.
- Stanhope MJ, Czelusniak J, Si JS, et al (1992) A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly. Mol Phylogenet Evol 1:148–160. https://doi.org/10.1016/1055-7903(92)90026-d
- Meredith RW, Janečka JE, Gatesy J, et al (2011) Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science 334:521–524. https://doi.org/10.1126/science.1211028
- Fang X, Nevo E, Han L, et al (2014) Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax. Nat Commun 5:3966. https://doi.org/10.1038/ncomms4966
- Steppan SJ, Schenk JJ (2017) Muroid rodent phylogenetics: 900-species tree reveals increasing diversification rates. PLoS One 12:e0183070. https://doi.org/10.1371/journal.pone.0183070
- Spradling TA, Hafner MS, Demastes JW (2001) Differences in Rate of Cytochrome-b Evolution Among Species of Rodents. J Mammal 82:65–80. https://doi.org/10.1644/1545-1542(2001)082<0065:DIROCB>2.0.CO;2
Metadados Adicionais
| Identificadores alternativos | 368d59c2-8b6e-45a5-9209-ead5a8461614 |
|---|---|
| https://ukraine.ipt.gbif.no/resource?r=spalaxoccurrenceeateu1 |