Blind mole rat (Spalacidae) sampling, used for phylogenetic analyses

出現紀錄
最新版本 published by Ukrainian Nature Conservation Group (NGO) on 1月 10, 2024 Ukrainian Nature Conservation Group (NGO)
發布日期:
2024年1月10日
授權條款:
CC-BY 4.0

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說明

The dataset contains detailed sampling data on the mole rats (genus Spalax and Nannospalax) used for phylogenetic analyses.

資料紀錄

此資源出現紀錄的資料已發佈為達爾文核心集檔案（DwC-A），其以一或多組資料表構成分享生物多樣性資料的標準格式。 核心資料表包含 64 筆紀錄。

此 IPT 存放資料以提供資料儲存庫服務。資料與資源的詮釋資料可由「下載」單元下載。「版本」表格列出此資源的其它公開版本，以便利追蹤其隨時間的變更。

版本

以下的表格只顯示可公開存取資源的已發布版本。

如何引用

研究者應依照以下指示引用此資源。:

Rusin M (2024). Blind mole rat (Spalacidae) sampling, used for phylogenetic analyses. Version 1.2. Ukrainian Nature Conservation Group (NGO). Occurrence dataset. https://ukraine.ipt.gbif.no/resource?r=spalaxoccurrenceeateu1&v=1.2

權利

研究者應尊重以下權利聲明。:

此資料的發布者及權利單位為 Ukrainian Nature Conservation Group (NGO)。 This work is licensed under a Creative Commons Attribution (CC-BY 4.0) License.

GBIF 註冊

此資源已向GBIF註冊，並指定以下之GBIF UUID: 368d59c2-8b6e-45a5-9209-ead5a8461614。  Ukrainian Nature Conservation Group (NGO) 發佈此資源，並經由Participant Node Managers Committee同意向GBIF註冊成為資料發佈者。

關鍵字

Occurrence; Spalax; mole rat; rodents; biodiversity; Eastern Europe; Nannospalax; mammals; Observation

聯絡資訊

Mikhail Rusin
  • 元數據提供者 ●
  • 出處 ●
  • 連絡人
researcher
Kyiv Zoo
UA
https://orcid.org/0000-0003-4349-4795
Oleksii Marushchak
  • 託管人
junior researcher
I. I. Schmalhausen Institute of Zoology NAS of Ukraine
Vul. B. Khmelnytskogo, 15
01030 Kyiv
UA
+380964882670
https://orcid.org/0000-0001-9380-5593

地理涵蓋範圍

The dataset consists of records from Romania, Ukraine and Russia.

界定座標範圍 緯度南界 經度西界 [43.24, 23.72], 緯度北界 經度東界 [48.657, 47.49]

分類群涵蓋範圍

The dataset consists of rodents from genera Spalax and Nannospalax.

Kingdom Animalia
Phylum Chordata
Class Mammalia
Order Rodentia
Family Spalacidae
Genus Spalax, Nannospalax

時間涵蓋範圍

起始日期 / 結束日期 2009-05-15 / 2019-04-09

取樣方法

41 new original samples of seven Spalacidae were collected in Ukraine, Romania and Russia during 2016-2019 years. Additional samples denote material accessible via GenBank (19 samples). Mole rats were collected in the field using hoe technic, gophinator traps or hand-picked (live captured during dispersal above ground or road mortality). Tissue samples were collected in 96% ethanol. DNA isolation and amplification has been performed in the Zonguldak Bülent Ecevit University (Türkiye) and sequencing outsourced in Macrogen (the Netherlands). One mitochondrial gene (full cytochrome b) and one nuclear gene (first exon of IRBP) were obtained for most of the samples. All original nucleotide data uploaded to NCBI GenBank.

研究範圍 The dataset consists of records of small rodents from Spalacidae family made on the territory of Romania, Ukraine and Russia in the period from 2009 to 2019 by author with the help of additional resources.
品質控管 All species identified in the field, and with genetic markers.

方法步驟描述:

  1. Surveys for mole rats: detailed results of surveys available at https://www.gbif.org/dataset/5c216d11-fe9a-4953-b9e4-1feb0b8bf788; https://www.gbif.org/dataset/3cc90eba-6de4-4d39-8f9a-8e1770120f10; https://www.gbif.org/dataset/599f4843-f07a-4369-8c53-ae4fb561f5e1.
  2. Animal trapping.
  3. Sample storage in ethanol.
  4. DNA isolation.
  5. DNA amplification.
  6. DNA sequencing.
  7. Uploading original nucleotide sequences to NCBI GenBank.
  8. Preparing a dataset of samples according to Darwin Core standards.

引用文獻

  1. Rusin, M., Çetintaş, O., Ghazali, M., Sándor, A. D., & Yanchukov, A. (2023). Underworld: Evolution of blind mole rats in Eastern Europe. Preprint.
  2. Németh A, Homonnay ZG, Krízsik V, et al (2013) Old views and new insights: taxonomic revision of the Bukovina blind mole rat, Spalax graecus (Rodentia: Spalacinae). Zoological Journal of the Linnean Society 169:903–914.
  3. Chişamera G, Bužan EV, Sahlean T, et al (2014) Bukovina blind mole rat Spalax graecus revisited: phylogenetics, morphology, taxonomy, habitat associations and conservation. Mammal Review 44:19–29.
  4. Stanhope MJ, Czelusniak J, Si JS, et al (1992) A molecular perspective on mammalian evolution from the gene encoding interphotoreceptor retinoid binding protein, with convincing evidence for bat monophyly. Mol Phylogenet Evol 1:148–160. https://doi.org/10.1016/1055-7903(92)90026-d
  5. Meredith RW, Janečka JE, Gatesy J, et al (2011) Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science 334:521–524. https://doi.org/10.1126/science.1211028
  6. Fang X, Nevo E, Han L, et al (2014) Genome-wide adaptive complexes to underground stresses in blind mole rats Spalax. Nat Commun 5:3966. https://doi.org/10.1038/ncomms4966
  7. Steppan SJ, Schenk JJ (2017) Muroid rodent phylogenetics: 900-species tree reveals increasing diversification rates. PLoS One 12:e0183070. https://doi.org/10.1371/journal.pone.0183070
  8. Spradling TA, Hafner MS, Demastes JW (2001) Differences in Rate of Cytochrome-b Evolution Among Species of Rodents. J Mammal 82:65–80. https://doi.org/10.1644/1545-1542(2001)082<0065:DIROCB>2.0.CO;2

額外的詮釋資料

替代的識別碼 368d59c2-8b6e-45a5-9209-ead5a8461614
https://ukraine.ipt.gbif.no/resource?r=spalaxoccurrenceeateu1